DIANA - microT-CDS
22/07/2012: DIANA-microT-CDS has been updated to host microRNA targets from both human and mouse genomes. Since the database is up to date with miRBase v18, users are strongly advised to apply miRBase's newly introduced microRNA nomeclature in the search field.
Results for miRNA
mmu-miR-505-3p
( threshold:
0.41
| kegg filter
off
|
1805
genes found)
more
miRNA name:
mmu-miR-505-3p
Alternative Description:
MIMAT0003513
miRNA Sequence:
CGUCAACACUUGCUGGUUUUCU
Related hairpins:
mmu-mir-505
Show
/
Hide
expression level graph
no expression found
miTG Score Threshold:
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medium
strict
KEGG filter:
Save results as file:
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microRNA
Gene
miTG Score
1
mmu-miR-505-3p
OTTMUSG00000010328 (ENSMUSG00000059218)
0.997408
Gene Description:
HYPOTHETICAL PROTEIN LOC381569 [SOURCE:REFSEQ PEPTIDE;ACC:NP_001005371]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000075045
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
249 - 257
0.0396657
1
Position on chromosome:
4 : 143399920 - 143399948
Conserved species:
rn4
RNA hybrid:
(3' UTR)
5'
C
A
U
_
_
_
_
_
U
G
U
U
G
U
U
C
_
_
_
U
_
_
_
_
_
_
_
_
_
_
_
U
3'
_
_
_
G
A
A
A
A
_
_
_
_
_
_
_
_
C
C
G
_
C
_
_
_
U
G
U
U
G
A
C
_
_
_
_
|
|
|
|
|
_
_
_
_
_
_
_
_
|
|
.
_
|
_
_
_
|
|
|
|
|
|
|
_
_
_
_
C
U
U
U
U
_
_
_
_
_
_
_
_
G
G
U
_
G
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
U
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
C
_
U
U
C
_
_
_
_
_
_
_
C
5'
UTR3
8mer
271 - 279
0.0683294
1
Position on chromosome:
4 : 143399898 - 143399926
Conserved species:
rn4
RNA hybrid:
(3' UTR)
5'
G
U
U
_
_
_
_
_
_
_
_
U
A
C
A
A
U
A
A
A
U
_
_
_
_
_
_
_
_
U
3'
_
_
_
G
A
C
U
_
G
C
A
_
_
_
_
_
_
_
_
_
_
G
U
G
U
U
G
A
C
_
_
_
_
.
|
|
.
_
|
|
|
_
_
_
_
_
_
_
_
_
_
|
|
|
|
|
|
|
|
_
_
_
_
U
U
G
G
_
C
G
U
_
_
_
_
_
_
_
_
_
_
C
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
U
_
_
_
_
U
_
_
_
U
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
2
mmu-miR-505-3p
DHX15 (ENSMUSG00000029169)
0.991938
Gene Description:
PUTATIVE PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX15 (EC 3.6.1.-)(DEAH BOX PROTEIN 15) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:O35286]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000031061
Region
Binding Type
Position
Score
Conservation
UTR3
8mer
179 - 187
0.0402353
12
Position on chromosome:
5 : 52541712 - 52541740
Conserved species:
rn4,oryCun1,hg18,panTro2,rheMac2,canFam2,bosTau3,dasNov1,loxAfr1,echTel1,monDom4,galGal3
RNA hybrid:
(3' UTR)
5'
A
A
C
A
U
U
U
A
U
_
_
_
U
C
_
C
U
U
U
U
_
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
G
C
C
_
_
C
_
_
_
_
_
G
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
.
|
|
_
_
|
_
_
_
_
_
|
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
U
G
G
_
_
G
_
_
_
_
_
C
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
U
_
_
_
U
C
_
U
U
_
_
_
_
_
_
_
_
_
_
_
C
5'
UTR3
7mer
336 - 344
0.0491254
12
Position on chromosome:
5 : 52541555 - 52541583
Conserved species:
rn4,oryCun1,hg18,panTro2,rheMac2,canFam2,bosTau3,dasNov1,loxAfr1,echTel1,monDom4,galGal3
RNA hybrid:
(3' UTR)
5'
G
G
U
A
U
G
C
A
U
_
_
_
_
_
U
U
_
_
_
_
U
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
G
A
U
C
G
_
_
G
U
A
A
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
.
|
.
|
.
_
_
|
.
|
|
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
U
U
G
G
U
_
_
C
G
U
U
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
U
_
_
_
_
_
_
_
_
_
_
_
C
_
_
_
_
_
_
_
C
5'
3
mmu-miR-505-3p
CCDC125 (ENSMUSG00000048924)
0.94732
Gene Description:
COILED-COIL DOMAIN-CONTAINING PROTEIN 125 [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q5U465]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000057325
Region
Binding Type
Position
Score
Conservation
UTR3
8mer
784 - 792
0.05793
4
Position on chromosome:
13 : 101467139 - 101467167
Conserved species:
rn4,hg18,panTro2,canFam2
RNA hybrid:
(3' UTR)
5'
C
A
_
_
_
_
_
U
G
_
C
U
_
_
_
U
A
U
U
U
_
_
_
_
_
_
_
_
A
3'
_
_
A
G
A
A
A
_
_
U
_
_
U
A
A
_
_
_
_
_
G
U
G
U
U
G
A
C
_
_
_
|
|
|
|
|
_
_
.
_
_
.
|
|
_
_
_
_
_
|
|
|
|
|
|
|
|
_
_
_
U
C
U
U
U
_
_
G
_
_
G
U
U
_
_
_
_
_
C
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
U
G
_
U
C
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
4
mmu-miR-505-3p
BCMO1 (ENSMUSG00000031845)
0.943395
Gene Description:
BETA,BETA-CAROTENE 15,15'-MONOOXYGENASE (EC 1.14.99.36)(BETA-CAROTENE DIOXYGENASE 1) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q9JJS6]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
Metabolic pathways
Retinol metabolism
Gene Links:
ENSMUST00000034308
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
273 - 281
0.0566876
1
Position on chromosome:
8 : 119657414 - 119657442
Conserved species:
rn4
RNA hybrid:
(3' UTR)
5'
G
C
U
U
C
A
U
U
G
G
U
_
_
_
_
_
_
U
_
_
_
_
_
_
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
_
_
A
G
A
A
C
U
_
A
G
U
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
_
_
|
.
|
|
|
.
_
|
|
.
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
_
_
U
U
U
U
G
G
_
U
C
G
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
_
_
C
_
_
_
_
_
_
_
_
_
_
U
U
C
_
_
_
_
_
_
_
C
5'
5
mmu-miR-505-3p
CYP46A1 (ENSMUSG00000021259)
0.939128
Gene Description:
CYTOCHROME P450 46A1 (EC 1.14.13.98)(CHOLESTEROL 24-HYDROXYLASE)(CH24H) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q9WVK8]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
Bile acid biosynthesis
Gene Links:
ENSMUST00000021684
Region
Binding Type
Position
Score
Conservation
UTR3
8mer
538 - 546
0.0554257
6
Position on chromosome:
12 : 109600413 - 109600441
Conserved species:
rn4,hg18,panTro2,rheMac2,canFam2,bosTau3
RNA hybrid:
(3' UTR)
5'
A
G
U
C
G
A
U
G
C
_
_
_
A
U
A
A
A
_
_
U
_
_
_
_
_
_
_
_
U
3'
_
_
_
_
_
_
_
_
_
C
C
A
_
_
_
_
_
C
G
_
G
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
|
|
|
_
_
_
_
_
|
.
_
|
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
G
G
U
_
_
_
_
_
G
U
_
C
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
U
_
_
_
C
_
_
_
_
_
_
U
_
_
_
_
_
_
_
_
C
5'
6
mmu-miR-505-3p
HMGB1 (ENSMUSG00000066551)
0.937157
Gene Description:
HIGH MOBILITY GROUP PROTEIN B1 (HIGH MOBILITY GROUP PROTEIN 1)(HMG-1) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:P63158]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
Base excision repair
Gene Links:
ENSMUST00000085546
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
462 - 470
0.0426243
12
Position on chromosome:
5 : 149859842 - 149859870
Conserved species:
rn4,oryCun1,hg18,panTro2,rheMac2,canFam2,bosTau3,loxAfr1,echTel1,monDom4,galGal3,xenTro2
RNA hybrid:
(3' UTR)
5'
A
A
A
A
A
_
_
_
_
_
U
G
_
_
_
_
U
G
U
U
U
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
A
A
A
A
U
_
_
C
G
G
C
_
_
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
|
|
|
|
.
_
_
|
.
|
|
_
_
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
U
U
U
U
G
_
_
G
U
C
G
_
_
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
C
_
_
_
_
_
_
_
_
_
_
_
U
U
C
_
_
_
_
_
_
_
_
_
C
5'
UTR3
7mer
976 - 984
0.0122462
6
Position on chromosome:
5 : 149859328 - 149859356
Conserved species:
rn4,hg18,panTro2,rheMac2,canFam2,loxAfr1
RNA hybrid:
(3' UTR)
5'
A
U
A
C
A
_
_
_
C
U
_
_
_
_
_
_
_
C
U
A
U
U
_
_
_
_
_
_
_
C
3'
_
_
_
_
_
A
G
A
_
_
G
C
U
_
G
U
A
_
_
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
|
|
|
_
_
.
|
.
_
|
.
|
_
_
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
U
C
U
_
_
U
G
G
_
C
G
U
_
_
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
U
U
_
_
_
U
_
_
_
U
C
_
_
_
_
_
_
_
_
_
_
C
5'
7
mmu-miR-505-3p
RBMS3 (ENSMUSG00000039607)
0.931525
Gene Description:
RNA-BINDING MOTIF, SINGLE-STRANDED-INTERACTING PROTEIN 3 [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q8BWL5]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000111773
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
1186 - 1194
0.0533693
16
Position on chromosome:
9 : 116486619 - 116486647
Conserved species:
rn4,oryCun1,hg18,panTro2,rheMac2,canFam2,bosTau3,dasNov1,loxAfr1,echTel1,monDom4,galGal3,xenTro2,tetNig1,fr2,danRer5
RNA hybrid:
(3' UTR)
5'
A
_
_
_
_
_
A
A
_
_
_
A
U
A
_
_
_
A
A
A
U
_
_
_
_
_
_
_
A
3'
_
A
A
A
G
C
_
_
U
A
G
_
_
_
G
A
G
_
_
_
_
U
G
U
U
G
A
C
_
_
|
|
|
.
|
_
_
.
|
|
_
_
_
.
|
|
_
_
_
_
|
|
|
|
|
|
|
_
_
U
U
U
U
G
_
_
G
U
C
_
_
_
U
U
C
_
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
C
_
_
_
_
_
_
_
_
_
_
G
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
8
mmu-miR-505-3p
SAP25 (ENSMUSG00000079165)
0.927813
Gene Description:
HISTONE DEACETYLASE COMPLEX SUBUNIT SAP25 (SIN3-ASSOCIATED POLYPEPTIDE, 25 KDA)(SIN3 COREPRESSOR COMPLEX SUBUNIT SAP25)(MSIN3A-BINDING PROTEIN) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q1EHW4]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000111000
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
85 - 93
0.0524412
5
Position on chromosome:
5 : 138084080 - 138084108
Conserved species:
rn4,oryCun1,hg18,panTro2,dasNov1
RNA hybrid:
(3' UTR)
5'
U
U
C
U
U
C
U
_
_
C
C
_
_
_
_
C
U
G
U
U
U
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
C
C
_
_
C
A
A
G
_
_
_
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
|
|
_
_
|
|
|
|
_
_
_
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
G
G
_
_
G
U
U
C
_
_
_
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
U
_
_
U
C
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
9
mmu-miR-505-3p
NOVA1 (ENSMUSG00000021047)
0.921333
Gene Description:
RNA-BINDING PROTEIN NOVA-1 (NEURO-ONCOLOGICAL VENTRAL ANTIGEN 1)(VENTRAL NEURON-SPECIFIC PROTEIN 1) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q9JKN6]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000021438
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
126 - 134
0.0509216
12
Position on chromosome:
12 : 47800821 - 47800849
Conserved species:
rn4,oryCun1,hg18,panTro2,rheMac2,canFam2,bosTau3,dasNov1,echTel1,monDom4,galGal3,xenTro2
RNA hybrid:
(3' UTR)
5'
U
U
A
U
G
C
A
A
A
U
_
_
_
U
G
_
_
A
_
U
A
_
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
_
G
A
A
_
_
C
G
_
C
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
_
.
|
|
_
_
|
.
_
|
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
_
U
U
U
_
_
G
U
_
G
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
_
C
_
_
_
U
G
_
_
C
_
U
U
C
_
_
_
_
_
_
_
C
5'
10
mmu-miR-505-3p
ARID4B (ENSMUSG00000039219)
0.916796
Gene Description:
AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4B (ARID DOMAIN-CONTAINING PROTEIN 4B)(HISTONE DEACETYLASE COMPLEX SUBUNIT SAP180)(180 KDA SIN3-ASSOCIATED POLYPEPTIDE)(SIN3-ASSOCIATED POLYPEPTIDE P180) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:A2CG63]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000049601
Region
Binding Type
Position
Score
Conservation
UTR3
8mer
666 - 674
0.0123565
1
Position on chromosome:
13 : 14279916 - 14279944
Conserved species:
rn4
RNA hybrid:
(3' UTR)
5'
_
_
_
_
_
A
G
C
C
A
C
U
_
_
_
U
_
_
C
_
_
_
_
_
_
_
_
_
A
3'
A
G
A
A
A
_
_
_
_
_
_
_
A
C
C
_
G
C
_
A
G
U
G
U
U
G
A
C
_
|
|
|
|
|
_
_
_
_
_
_
_
|
|
|
_
|
|
_
|
|
|
|
|
|
|
|
|
_
U
C
U
U
U
_
_
_
_
_
_
_
U
G
G
_
C
G
_
U
C
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
U
_
_
U
_
_
_
_
_
_
_
_
_
C
5'
UTR3
7mer
1565 - 1573
0.00396259
1
Position on chromosome:
13 : 14289912 - 14289940
Conserved species:
rn4
RNA hybrid:
(3' UTR)
5'
G
C
U
C
C
A
U
C
A
_
_
_
_
U
G
C
U
G
U
U
A
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
C
A
G
C
_
_
_
_
_
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
|
|
|
|
_
_
_
_
_
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
G
U
C
G
_
_
_
_
_
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
G
_
_
_
_
U
U
C
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
UTR3
7mer
3121 - 3129
0.0336055
12
Position on chromosome:
13 : 14291468 - 14291496
Conserved species:
rn4,oryCun1,hg18,panTro2,rheMac2,canFam2,bosTau3,dasNov1,loxAfr1,echTel1,monDom4,galGal3
RNA hybrid:
(3' UTR)
5'
U
U
U
G
U
A
C
_
_
_
_
_
_
U
A
_
_
_
A
U
U
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
A
G
A
C
U
G
_
_
A
A
G
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
|
.
|
|
.
.
_
_
|
|
|
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
U
U
U
G
G
U
_
_
U
U
C
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
U
_
_
_
_
_
_
C
G
_
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
11
mmu-miR-505-3p
LDOC1 (ENSMUSG00000057615)
0.9135
Gene Description:
PROTEIN LDOC1 [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q7TPY9]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000075983
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
584 - 592
0.0492306
5
Position on chromosome:
X : 58963905 - 58963933
Conserved species:
rn4,hg18,panTro2,canFam2,bosTau3
RNA hybrid:
(3' UTR)
5'
G
U
G
C
C
U
_
_
_
_
_
A
_
_
_
U
U
A
A
A
A
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
G
C
C
G
G
_
C
A
G
_
_
_
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
.
|
|
.
|
_
|
|
.
_
_
_
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
U
G
G
U
C
_
G
U
U
_
_
_
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
U
_
_
_
_
_
_
_
_
_
C
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
12
mmu-miR-505-3p
TSPAN33 (ENSMUSG00000001763)
0.913327
Gene Description:
TETRASPANIN-33 (TSPAN-33)(PROERYTHROBLAST NEW MEMBRANE)(PENUMBRA)(MPEN) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q8R3S2]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000115250
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
907 - 915
0.049195
8
Position on chromosome:
6 : 29668526 - 29668554
Conserved species:
rn4,oryCun1,hg18,panTro2,rheMac2,canFam2,bosTau3,dasNov1
RNA hybrid:
(3' UTR)
5'
G
C
_
_
_
_
_
U
_
_
_
_
_
_
A
U
A
A
A
_
_
U
U
_
_
_
_
_
_
_
A
3'
_
_
A
G
A
A
A
_
_
_
G
G
C
A
_
_
_
_
_
A
G
_
_
U
G
U
U
G
A
C
_
_
_
|
|
|
|
|
_
_
_
.
|
|
|
_
_
_
_
_
|
|
_
_
|
|
|
|
|
|
|
_
_
_
U
C
U
U
U
_
_
_
U
C
G
U
_
_
_
_
_
U
C
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
U
G
G
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
13
mmu-miR-505-3p
MYCN (ENSMUSG00000037169)
0.913255
Gene Description:
N-MYC PROTO-ONCOGENE PROTEIN [SOURCE:UNIPROTKB/SWISS-PROT;ACC:P03966]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000043396
Region
Binding Type
Position
Score
Conservation
UTR3
8mer
69 - 77
0.0491802
8
Position on chromosome:
12 : 12943734 - 12943762
Conserved species:
rn4,hg18,panTro2,rheMac2,canFam2,bosTau3,echTel1,galGal3
RNA hybrid:
(3' UTR)
5'
U
U
U
U
U
U
U
U
U
_
_
_
_
A
A
A
_
_
U
U
_
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
A
A
A
C
_
_
_
C
A
_
_
G
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
|
|
|
|
_
_
_
|
|
_
_
|
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
U
U
U
G
_
_
_
G
U
_
_
C
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
U
_
_
_
_
G
U
C
_
_
U
_
_
_
_
_
_
_
_
_
C
5'
14
mmu-miR-505-3p
SCAPER (ENSMUSG00000034007)
0.912549
Gene Description:
S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ER [SOURCE:REFSEQ PEPTIDE;ACC:NP_001074810]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000098748
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
25 - 33
0.0200116
3
Position on chromosome:
9 : 55610138 - 55610166
Conserved species:
rn4,echTel1,monDom4
RNA hybrid:
(3' UTR)
5'
U
C
U
G
U
C
U
U
U
_
_
_
_
_
_
_
_
_
_
_
U
_
U
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
G
A
A
G
A
_
_
A
G
U
A
_
G
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
|
|
|
.
|
_
_
|
|
.
|
_
|
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
C
U
U
U
U
_
_
U
C
G
U
_
C
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
U
_
_
_
_
_
G
G
_
_
_
_
U
_
_
_
_
_
_
_
_
_
C
5'
UTR3
6mer
561 - 569
0.0050482
9
Position on chromosome:
9 : 55457882;55503712 - 55457881;55503740
Conserved species:
rn4,hg18,panTro2,rheMac2,canFam2,bosTau3,dasNov1,loxAfr1,echTel1
RNA hybrid:
(3' UTR)
5'
U
A
A
U
_
_
_
_
_
U
C
_
U
G
A
U
A
C
A
C
C
A
A
_
_
_
_
_
_
3'
_
_
_
_
G
G
A
C
C
_
_
C
_
_
_
_
_
_
_
_
_
_
_
U
U
G
A
C
G
_
_
_
_
.
.
|
|
|
_
_
|
_
_
_
_
_
_
_
_
_
_
_
|
|
|
|
|
|
_
_
_
_
U
U
U
G
G
_
_
G
_
_
_
_
_
_
_
_
_
_
_
A
A
C
U
G
C
(miRNA)
3'
_
_
_
U
_
_
_
_
_
U
C
_
U
U
C
A
C
_
_
_
_
_
_
_
_
_
_
_
_
5'
UTR3
6mer
633 - 641
0.00222003
1
Position on chromosome:
9 : 55457810 - 55457838
Conserved species:
oryCun1
RNA hybrid:
(3' UTR)
5'
C
A
A
A
U
_
_
_
_
A
_
_
_
U
U
U
U
G
_
_
_
G
C
_
_
_
_
_
_
3'
_
_
_
_
_
A
A
A
C
_
A
G
U
_
_
_
_
_
A
A
G
_
_
U
U
G
A
C
G
_
_
_
_
_
|
|
|
|
_
|
|
.
_
_
_
_
_
|
|
|
_
_
|
|
|
|
|
|
_
_
_
_
_
U
U
U
G
_
U
C
G
_
_
_
_
_
U
U
C
_
_
A
A
C
U
G
C
(miRNA)
3'
_
_
_
_
U
_
_
_
_
G
_
_
_
_
_
_
_
_
_
_
_
A
C
_
_
_
_
_
_
5'
UTR3
8mer
1972 - 1980
0.0217551
1
Position on chromosome:
9 : 55398286 - 55398314
Conserved species:
rn4
RNA hybrid:
(3' UTR)
5'
A
U
_
_
_
_
U
A
_
_
A
_
_
_
_
U
U
U
C
_
_
_
_
_
_
_
_
_
U
3'
_
_
G
A
A
G
_
_
A
C
_
C
A
G
U
_
_
_
_
A
G
U
G
U
U
G
A
C
_
_
_
|
|
|
.
_
_
|
|
_
|
|
|
.
_
_
_
_
|
|
|
|
|
|
|
|
|
_
_
_
C
U
U
U
_
_
U
G
_
G
U
C
G
_
_
_
_
U
C
A
C
A
A
C
U
G
_
(miRNA)
3'
_
U
_
_
_
_
_
_
_
_
_
_
_
_
_
U
_
_
_
_
_
_
_
_
_
_
_
_
C
5'
15
mmu-miR-505-3p
CEP170 (ENSMUSG00000057335)
0.910225
Gene Description:
CENTROSOMAL PROTEIN OF 170 KDA (CEP170) [SOURCE:UNIPROTKB/SWISS-PROT;ACC:Q6A065]
PubMed Links:
miRNA
|
gene
|
both
KEGG Pathways:
-
Gene Links:
ENSMUST00000057037
Region
Binding Type
Position
Score
Conservation
UTR3
7mer
61 - 69
0.0450076
6
Position on chromosome:
1 : 178665741 - 178665769
Conserved species:
panTro2,rheMac2,canFam2,bosTau3,dasNov1,loxAfr1
RNA hybrid:
(3' UTR)
5'
G
G
G
G
C
A
U
U
_
_
_
_
G
_
_
_
_
_
U
A
A
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
G
G
A
A
_
C
A
G
C
A
_
_
_
U
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
.
.
|
|
_
|
|
|
|
|
_
_
_
|
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
U
U
U
U
_
G
U
C
G
U
_
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
C
_
_
_
_
G
_
_
_
_
_
U
C
_
_
_
_
_
_
_
_
C
5'
UTR3
6mer
697 - 705
0.00325922
1
Position on chromosome:
1 : 178665105 - 178665133
Conserved species:
rn4
RNA hybrid:
(3' UTR)
5'
G
A
C
U
G
A
C
A
U
U
U
G
U
A
C
A
_
_
_
G
_
_
_
_
_
_
_
_
_
_
A
3'
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
U
A
G
_
A
A
_
_
G
U
U
G
A
C
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
.
|
|
_
|
|
_
_
|
|
|
|
|
|
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
G
U
C
_
U
U
_
_
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
G
_
_
_
G
_
_
C
A
_
_
_
_
_
_
C
5'
CDS
7mer
4150 - 4158
0.0035419
Position on chromosome:
1 : 178670121 - 178670149
Conserved species:
RNA hybrid:
(3' UTR)
5'
A
G
A
_
_
_
_
_
_
_
A
A
_
_
_
_
C
_
_
U
C
_
_
_
_
_
_
_
U
3'
_
_
_
A
G
G
A
A
A
C
_
_
C
G
G
U
_
G
G
_
_
U
G
U
U
G
A
C
_
_
_
_
|
|
.
|
|
|
|
_
_
|
.
|
.
_
.
|
_
_
|
|
|
|
|
|
|
_
_
_
_
U
C
U
U
U
U
G
_
_
G
U
C
G
_
U
C
_
_
A
C
A
A
C
U
G
_
(miRNA)
3'
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
_
U
_
_
_
_
_
_
_
_
_
_
_
C
5'
